Rumored Buzz on bioinformatics project help



dupRadar [seven] An R offer which supplies capabilities for plotting and analyzing the duplication rates dependent on the expression levels.

PerM is usually a computer software deal which was designed to carry out highly effective genome scale alignments for hundreds of a lot of shorter reads made by the ABI Strong and Illumina sequencing platforms.

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SolexaQA calculates sequence high quality studies and generates Visible representations of information excellent for next-era sequencing knowledge. Initially made for your Illumina system (historically known as “Solexa”), SolexaQA now also supports Ion Torrent and 454 information.

Quake is a Device to suitable substitution sequencing errors in experiments with deep coverage for Illumina sequencing reads.

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GeneScissors A comprehensive approach to detecting and correcting spurious transcriptome inference because of RNAseq reads misalignment.

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CNVseq detects duplicate selection variants supported over a statistical design derived from array-comparative genomic hybridization. Sequences alignment are done by BLAT, calculations are executed by R modules and it is thoroughly automated working with Perl.

IsoformSwitchAnalyzeR IsoformSwitchAnalyzeR is really an R offer that permits statistical identification of isoform switches with predicted functional effects where by the consequences of curiosity is usually picked out from the long record but contains get/loss of protein domains, signal peptides changes in NMD sensitivity.

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BioQueue is a web-based mostly queue motor designed preferentially to Increase the performance and robustness of occupation execution in bioinformatics exploration by estimating the method means essential by a certain job.

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StringTie StringTie is an assembler of RNA-Seq alignments into probable transcripts. It uses a novel community move algorithm as well as an optional de novo assembly move to assemble and quantitate complete-length transcripts symbolizing various splice variants for every gene locus.

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